The nın-lıke proteın (nlp) famıly ın common bean: genome-wıde ıdentıfıcatıon, evolutıon and expressıon analysıs

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dc.contributor.authorBüyük, İlker
dc.contributor.departmentBiyolojitr_TR
dc.contributor.facultyFen Fakültesitr_TR
dc.date.accessioned2021-12-03T07:28:14Z
dc.date.available2021-12-03T07:28:14Z
dc.date.issued2021
dc.description.abstractOne of the plant-specific transcription factor families that play an important role in responses to nitrogen deficiency is NODULE INCEPTION-like (NIN-like) proteins (NLPs). However, the properties and evolutionary relationships of NIN genes in P. vulgaris, which enable nodule formation naturally, have not been studied yet. 12 Pvul-NIN genes have been identified in this study and the approximate positions of these genes have been determined. At the same time, several biochemical and physicochemical properties of NIN-like proteins have been elucidated. Comparisons between both monocot and dicot, but also nodule binding and non-nodule binding species were considered when investigating the evolutionary relationships of NIN genes. 16 duplication events (14 segmental and 2 tandem) have been shown to play a role in the expansion of the NIN gene family in P. vulgaris. In addition, comparative expression analysis of NIN genes was performed by processing publicly available RNAseq data and different levels of Pvul-NIN gene expression under both salt and drought stress were detected, suggesting the roles of Pvul-NIN gene for abiotic stress response. Expression levels of NIN genes have also been investigated in different plant tissues and have been shown to be intensely expressed in nodules and root tissues. This is the first study on the in-silico detection and characterization of Pvul-NIN genes to examine gene expression levels in common bean. The results could therefore provide the basis for future studies of functional characterization of Pvul-NIN genes.tr_TR
dc.description.indexYoktr_TR
dc.identifier.issue01tr_TR
dc.identifier.urihttp://hdl.handle.net/20.500.12575/76653
dc.identifier.volume30tr_TR
dc.language.isoentr_TR
dc.publisherAnkara Üniversitesi Fen Fakültesitr_TR
dc.relation.journalCommunications, Series C: Biologytr_TR
dc.relation.publicationcategoryMakale - Ulusal Hakemli Dergi - Kurum Öğretim Elemanıtr_TR
dc.subjectNIN-like proteins (NLPs)tr_TR
dc.subjectin-silico analysistr_TR
dc.subjectbioinformaticstr_TR
dc.subjectbeantr_TR
dc.subjectRNAseqtr_TR
dc.titleThe nın-lıke proteın (nlp) famıly ın common bean: genome-wıde ıdentıfıcatıon, evolutıon and expressıon analysıstr_TR
dc.typeArticletr_TR

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Cilt:30 Sayı:01 (2021)